RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g48530.1 View Network Show in Genome Browser |
| Other Names | Os06g0698859 |
| Description | ZOS6-09 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29357512-29364555 Nucleotide Length: 2172 |
| Protein-coding | LOC_Os06g48530 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g24160 LOC_Os01g72890 LOC_Os05g01540 |
| Downstream Genes | LOC_Os12g01916 LOC_Os11g01869 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g48530.1 |
| Rice Genome Annotation | LOC_Os06g48530.1 |
| Ricechip | LOC_Os06g48530.1 |
| KEGG | osa:9270793 dosa:Os06t0698859-01 |
| Entrez-Gene | 9270793 |