RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g48534.1 View Network Show in Genome Browser |
| Other Names | Os06g0698900 |
| Description | GATA transcription factor 25, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29365981-29370366 Nucleotide Length: 879 |
| Protein-coding | LOC_Os06g48534 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g32480 LOC_Os03g28940 LOC_Os04g55920 LOC_Os01g61900 LOC_Os03g04620 |
| Downstream Genes | LOC_Os08g33160 LOC_Os07g42370 LOC_Os10g38980 |
| Reference | |
|---|---|
| PubMed | 19618278 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g48534.1 |
| Rice Genome Annotation | LOC_Os06g48534.1 |
| Ricechip | LOC_Os06g48534.1 |
| KEGG | osa:4341953 dosa:Os06t0698900-01 |
| Entrez-Gene | 4341953 |