RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g48620.1 View Network Show in Genome Browser |
| Other Names | Os06g0699700 |
| Description | 4-amino-4-deoxychorismate synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29413392-29418992 Nucleotide Length: 2688 |
| Protein-coding | LOC_Os06g48620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g15120 LOC_Os01g43020 LOC_Os01g38970 LOC_Os03g50880 LOC_Os02g47850 LOC_Os03g15780 LOC_Os04g38950 LOC_Os02g08270 LOC_Os05g49770 LOC_Os03g03450 LOC_Os03g61120 More.. |
| Downstream Genes | LOC_Os12g36950 LOC_Os08g23730 LOC_Os09g08130 LOC_Os08g23150 LOC_Os08g28860 LOC_Os08g28840 LOC_Os09g25610 LOC_Os08g04180 LOC_Os07g08430 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | TRPSYN-PWY PWY-6660 PWY-6661 PWY-5958 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g48620.1 |
| Rice Genome Annotation | LOC_Os06g48620.1 |
| Ricechip | LOC_Os06g48620.1 |
| KEGG | osa:4341959 dosa:Os06t0699700-01 |
| Entrez-Gene | 4341959 |