RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g48650.1 View Network Show in Genome Browser |
| Other Names | Os06g0700000 |
| Description | OsSub52 - Putative Subtilisin homologue, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29434356-29441106 Nucleotide Length: 2463 |
| Protein-coding | LOC_Os06g48650 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g44440 LOC_Os02g42380 LOC_Os03g37984 LOC_Os02g47210 LOC_Os03g45400 LOC_Os03g18210 LOC_Os01g37590 LOC_Os03g25920 LOC_Os03g25840 LOC_Os03g25869 LOC_Os02g51540 More.. |
| Downstream Genes | LOC_Os08g39550 LOC_Os09g37270 LOC_Os08g41370 LOC_Os12g39080 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR172b |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g48650.1 |
| Rice Genome Annotation | LOC_Os06g48650.1 |
| Ricechip | LOC_Os06g48650.1 |
| KEGG | osa:4341961 dosa:Os06t0700000-01 |
| Entrez-Gene | 4341961 |