RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g48980.1 View Network Show in Genome Browser |
| Other Names | Os06g0703000 |
| Description | protein kinase APK1B, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29675090-29678081 Nucleotide Length: 1209 |
| Protein-coding | LOC_Os06g48980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g37904 LOC_Os02g05630 LOC_Os06g33549 LOC_Os02g15594 LOC_Os04g56450 LOC_Os06g48300 LOC_Os06g44210 LOC_Os03g18150 LOC_Os02g08364 LOC_Os06g33530 LOC_Os02g55560 More.. |
| Downstream Genes | LOC_Os07g32380 LOC_Os10g39540 LOC_Os09g38550 LOC_Os09g30100 LOC_Os11g04170 LOC_Os12g08070 LOC_Os09g32810 LOC_Os07g30210 LOC_Os08g33860 LOC_Os11g13820 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g48980.1 |
| Rice Genome Annotation | LOC_Os06g48980.1 |
| Ricechip | LOC_Os06g48980.1 |
| KEGG | osa:4341982 dosa:Os06t0703000-01 |
| Entrez-Gene | 4341982 |