RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g49080.1 View Network Show in Genome Browser |
| Other Names | Os06g0704300 |
| Description | zinc finger C-x8-C-x5-C-x3-H type family protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29738880-29742503 Nucleotide Length: 1173 |
| Protein-coding | LOC_Os06g49080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005635 | nuclear envelope | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g10790 LOC_Os01g63780 LOC_Os03g18180 LOC_Os01g54240 LOC_Os01g10350 LOC_Os06g20090 LOC_Os03g22690 LOC_Os03g57430 LOC_Os05g49890 LOC_Os03g46480 LOC_Os05g28290 More.. |
| Downstream Genes | LOC_Os11g03794 LOC_Os12g03540 LOC_Os11g42420 LOC_Os12g38110 LOC_Os08g01054 LOC_Os07g46180 LOC_Os09g28019 LOC_Os08g07960 LOC_Os12g06890 LOC_Os12g06870 LOC_Os08g06330 More.. |
| Reference | |
|---|---|
| PubMed | 22570626 18953406 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g49080.1 |
| Rice Genome Annotation | LOC_Os06g49080.1 |
| Ricechip | LOC_Os06g49080.1 |
| KEGG | osa:4341994 dosa:Os06t0704300-01 |
| Entrez-Gene | 4341994 |