RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g49140.1 View Network Show in Genome Browser |
| Other Names | Os06g0704900 |
| Description | ribosomal RNA large subunit methyltransferase J, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29782067-29784932 Nucleotide Length: 954 |
| Protein-coding | LOC_Os06g49140 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g43150 LOC_Os01g39260 LOC_Os01g39250 LOC_Os01g40820 LOC_Os06g45820 LOC_Os02g54340 LOC_Os06g09290 LOC_Os06g12370 LOC_Os02g21970 LOC_Os02g43350 LOC_Os03g22420 More.. |
| Downstream Genes | LOC_Os10g36860 LOC_Os10g30580 LOC_Os06g51029 LOC_Os07g42632 LOC_Os11g14230 LOC_Os10g22700 LOC_Os07g47530 LOC_Os10g37500 LOC_Os11g43970 LOC_Os07g33390 LOC_Os09g19570 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00380 rn00624 rn01120 rn00340 rn00350 rn00130 rn01100 rn01110 |
| Metacyc Pathways | PWY-4021 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g49140.1 |
| Rice Genome Annotation | LOC_Os06g49140.1 |
| Ricechip | LOC_Os06g49140.1 |
| KEGG | osa:4342000 dosa:Os06t0704900-01 |
| Entrez-Gene | 4342000 |