RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g49310.1 View Network Show in Genome Browser |
| Other Names | Os06g0707100 |
| Description | MATE efflux family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29877099-29885249 Nucleotide Length: 1452 |
| Protein-coding | LOC_Os06g49310 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g62200 LOC_Os01g65000 LOC_Os02g34580 LOC_Os01g61510 LOC_Os05g39240 LOC_Os01g61550 LOC_Os03g53780 LOC_Os01g52790 |
| Downstream Genes | LOC_Os12g01420 LOC_Os11g01410 LOC_Os08g18044 LOC_Os08g06250 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR172b osa-miR172a osa-miR172d-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g49310.1 |
| Rice Genome Annotation | LOC_Os06g49310.1 |
| Ricechip | LOC_Os06g49310.1 |
| KEGG | osa:4342011 dosa:Os06t0707100-01 |
| Entrez-Gene | 4342011 |