RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g49430.1 View Network Show in Genome Browser |
| Other Names | Os06g0708000 |
| Description | CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29949829-29954874 Nucleotide Length: 1743 |
| Protein-coding | LOC_Os06g49430 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0004871 | signal transducer activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g37904 LOC_Os04g56450 LOC_Os02g05630 LOC_Os06g33549 LOC_Os06g48300 LOC_Os02g15594 LOC_Os06g33530 LOC_Os02g55560 LOC_Os02g35910 LOC_Os04g52000 LOC_Os04g37660 More.. |
| Downstream Genes | LOC_Os07g32380 LOC_Os10g39540 LOC_Os07g49040 LOC_Os07g07390 LOC_Os09g30100 LOC_Os11g13820 LOC_Os11g47840 LOC_Os07g22710 LOC_Os09g35730 LOC_Os12g19290 LOC_Os12g05394 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1429-5p |
| Reference | |
|---|---|
| PubMed | 16673940 21487048 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g49430.1 |
| Rice Genome Annotation | LOC_Os06g49430.1 |
| Ricechip | LOC_Os06g49430.1 |
| KEGG | osa:4342017 dosa:Os06t0708000-01 |
| Entrez-Gene | 4342017 |