RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g49510.2 View Network Show in Genome Browser |
| Other Names | Os06g0708900 |
| Description | zinc knuckle family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 29990034-29992228 Nucleotide Length: 1053 |
| Protein-coding | LOC_Os06g49510 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g28980 LOC_Os03g22900 LOC_Os06g19730 LOC_Os05g48960 LOC_Os02g52250 LOC_Os03g60130 LOC_Os06g38470 LOC_Os03g22380 LOC_Os05g30140 LOC_Os01g54040 LOC_Os02g12380 More.. |
| Downstream Genes | LOC_Os09g32740 LOC_Os08g37960 LOC_Os06g49740 LOC_Os07g47630 LOC_Os07g12630 LOC_Os10g39620 LOC_Os07g43050 LOC_Os09g31482 LOC_Os11g16390 LOC_Os12g25120 LOC_Os08g33100 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5161 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g49510.2 |
| Rice Genome Annotation | LOC_Os06g49510.2 |
| Ricechip | LOC_Os06g49510.2 |
| KEGG | osa:4342025 dosa:Os06t0708900-01 |
| Entrez-Gene | 4342025 |