RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g49740.1 View Network Show in Genome Browser |
| Other Names | Os06g0711600 |
| Description | pre-mRNA-splicing factor syf2, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 30087158-30089572 Nucleotide Length: 1023 |
| Protein-coding | LOC_Os06g49740 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g67134 LOC_Os06g49510 LOC_Os04g50990 LOC_Os02g28810 LOC_Os06g30060 LOC_Os02g47140 LOC_Os04g28180 LOC_Os02g14059 LOC_Os06g35730 LOC_Os05g11710 LOC_Os01g10820 More.. |
| Downstream Genes | LOC_Os11g29190 LOC_Os07g42170 LOC_Os08g02410 LOC_Os07g32420 LOC_Os08g02400 LOC_Os10g39620 LOC_Os07g34589 LOC_Os07g10720 LOC_Os09g31180 LOC_Os09g15770 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g49740.1 |
| Rice Genome Annotation | LOC_Os06g49740.1 |
| Ricechip | LOC_Os06g49740.1 |
| KEGG | osa:4342038 dosa:Os06t0711600-01 |
| Entrez-Gene | 4342038 |