RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g49840.2 View Network Show in Genome Browser |
| Other Names | Os06g0712700 |
| Description | OsMADS16 - MADS-box family gene with MIKCc type-box, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 30173485-30177996 Nucleotide Length: 675 |
| Protein-coding | LOC_Os06g49840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g54160 LOC_Os06g08380 LOC_Os01g55040 LOC_Os04g53930 LOC_Os06g27890 LOC_Os04g35700 LOC_Os03g03610 LOC_Os01g43650 LOC_Os01g22710 LOC_Os02g35010 LOC_Os06g06090 More.. |
| Downstream Genes | LOC_Os07g01820 LOC_Os11g40100 LOC_Os12g31350 LOC_Os11g10100 LOC_Os09g12800 LOC_Os07g19560 LOC_Os07g37510 LOC_Os07g37530 LOC_Os12g36680 LOC_Os07g48010 LOC_Os07g38950 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5179 osa-miR166k-5p |
| Reference | |
|---|---|
| PubMed | 14558657 21784949 12506001 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g49840.2 |
| Rice Genome Annotation | LOC_Os06g49840.2 |
| Ricechip | LOC_Os06g49840.2 |
| KEGG | osa:4342047 dosa:Os06t0712700-01 |
| Entrez-Gene | 4342047 |