RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g49870.1 View Network Show in Genome Browser |
| Other Names | Os06g0712900 |
| Description | tRNA-dihydrouridine synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 30187080-30189238 Nucleotide Length: 1266 |
| Protein-coding | LOC_Os06g49870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g18830 LOC_Os01g69970 LOC_Os03g22350 LOC_Os01g13730 LOC_Os02g02360 LOC_Os05g02400 LOC_Os02g26850 LOC_Os06g06730 LOC_Os03g22890 LOC_Os04g50660 LOC_Os03g19960 More.. |
| Downstream Genes | LOC_Os07g43980 LOC_Os07g30250 LOC_Os11g01420 LOC_Os12g01430 LOC_Os07g20580 LOC_Os09g18320 LOC_Os08g28980 LOC_Os09g19560 LOC_Os07g25440 LOC_Os08g10570 LOC_Os12g42150 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY0-162 PWY-5098 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g49870.1 |
| Rice Genome Annotation | LOC_Os06g49870.1 |
| Ricechip | LOC_Os06g49870.1 |
| KEGG | osa:4342049 dosa:Os06t0712900-01 |
| Entrez-Gene | 4342049 |