RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g49970.2 View Network Show in Genome Browser |
| Other Names | Os06g0713800 |
| Description | alpha-amylase precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 30262778-30266915 Nucleotide Length: 1338 |
| Protein-coding | LOC_Os06g49970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g41140 LOC_Os02g56850 LOC_Os03g56580 LOC_Os05g32710 LOC_Os06g05740 LOC_Os04g32330 LOC_Os02g32490 LOC_Os04g17050 LOC_Os04g58090 LOC_Os05g23260 LOC_Os01g25386 More.. |
| Downstream Genes | LOC_Os07g46790 LOC_Os09g39570 LOC_Os09g29404 LOC_Os08g05880 LOC_Os07g43390 LOC_Os07g40630 LOC_Os07g48960 LOC_Os08g40930 LOC_Os06g51084 LOC_Os09g27830 LOC_Os08g17680 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5071 osa-miR2905 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 |
| Metacyc Pathways | PWY-842 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g49970.2 |
| Rice Genome Annotation | LOC_Os06g49970.2 |
| Ricechip | LOC_Os06g49970.2 |
| KEGG | osa:4342055 dosa:Os06t0713800-01 |
| Entrez-Gene | 4342055 |