RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g51290.4 View Network Show in Genome Browser |
| Other Names | Os06g0729000 |
| Description | phytoene synthase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 31051971-31055846 Nucleotide Length: 1107 |
| Protein-coding | LOC_Os06g51290 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g59040 LOC_Os03g08570 LOC_Os03g62510 LOC_Os02g51020 LOC_Os05g33520 LOC_Os01g68450 LOC_Os02g04710 LOC_Os02g04690 LOC_Os02g04760 LOC_Os04g47290 LOC_Os02g58790 More.. |
| Downstream Genes | LOC_Os07g10490 LOC_Os12g43130 LOC_Os09g38320 LOC_Os11g36440 LOC_Os11g18366 LOC_Os11g35710 LOC_Os11g18194 LOC_Os12g43590 LOC_Os10g01044 LOC_Os11g08569 LOC_Os07g10130 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g51290.4 |
| Rice Genome Annotation | LOC_Os06g51290.4 |
| Ricechip | LOC_Os06g51290.4 |
| KEGG | osa:4342137 dosa:Os06t0729000-01 |
| Entrez-Gene | 4342137 |