RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g51350.1 View Network Show in Genome Browser |
| Other Names | Os06g0729800 |
| Description | IPP transferase, putative, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 31100869-31102438 Nucleotide Length: 1254 |
| Protein-coding | LOC_Os06g51350 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g72880 LOC_Os02g37920 LOC_Os03g51790 LOC_Os01g03130 LOC_Os02g49980 LOC_Os03g34040 LOC_Os03g49220 LOC_Os02g29400 LOC_Os02g26660 LOC_Os04g31270 LOC_Os04g54380 More.. |
| Downstream Genes | LOC_Os09g37930 LOC_Os11g38020 LOC_Os11g17610 LOC_Os12g42700 LOC_Os10g31820 LOC_Os09g10760 LOC_Os11g38030 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00908 rn01100 rn01110 |
| Metacyc Pathways | PWY-2781 |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g51350.1 |
| Rice Genome Annotation | LOC_Os06g51350.1 |
| Ricechip | LOC_Os06g51350.1 |
| KEGG | osa:4342142 dosa:Os06t0729800-01 |
| Entrez-Gene | 4342142 |