RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os06g51450.1 View Network Show in Genome Browser |
| Other Names | Os06g0731100 |
| Description | PHD-finger domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr6 CDS Coordinates (5'-3'): 31161699-31169513 Nucleotide Length: 2400 |
| Protein-coding | LOC_Os06g51450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g14510 LOC_Os03g53700 LOC_Os03g50780 LOC_Os02g52960 LOC_Os01g65600 LOC_Os01g08820 LOC_Os01g66420 LOC_Os06g12400 LOC_Os02g05450 LOC_Os01g73460 LOC_Os05g01230 More.. |
| Downstream Genes | LOC_Os12g34330 LOC_Os12g24540 LOC_Os11g14010 LOC_Os07g41740 LOC_Os07g12910 LOC_Os11g18770 LOC_Os09g21770 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00290 rn00660 rn01100 rn01110 rn01210 |
| Metacyc Pathways | ILEUSYN-PWY VALSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os06g51450.1 |
| Rice Genome Annotation | LOC_Os06g51450.1 |
| Ricechip | LOC_Os06g51450.1 |
| KEGG | osa:4342152 dosa:Os06t0731100-00 |
| Entrez-Gene | 4342152 |