RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g02300.1 View Network Show in Genome Browser |
| Other Names | Os07g0113700 |
| Description | tetratricopeptide repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 753654-763372 Nucleotide Length: 3036 |
| Protein-coding | LOC_Os07g02300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g51730 LOC_Os03g22140 LOC_Os03g19200 LOC_Os01g42960 LOC_Os05g31062 LOC_Os06g11320 LOC_Os02g43020 LOC_Os02g34830 LOC_Os02g34540 LOC_Os02g01030 LOC_Os01g43030 More.. |
| Downstream Genes | LOC_Os10g32300 LOC_Os09g36740 LOC_Os07g49000 LOC_Os07g06710 LOC_Os11g05090 LOC_Os08g41390 LOC_Os07g29360 LOC_Os10g36250 LOC_Os11g16540 LOC_Os10g34540 LOC_Os08g39080 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g02300.1 |
| Rice Genome Annotation | LOC_Os07g02300.1 |
| Ricechip | LOC_Os07g02300.1 |
| KEGG | osa:4342244 dosa:Os07t0113700-01 |
| Entrez-Gene | 4342244 |