RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g03130.1 View Network Show in Genome Browser |
| Other Names | Os07g0123300 |
| Description | PDV2, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 1199188-1201376 Nucleotide Length: 894 |
| Protein-coding | LOC_Os07g03130 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g48100 LOC_Os01g67510 LOC_Os04g06770 LOC_Os05g51790 LOC_Os06g11180 LOC_Os05g35520 LOC_Os03g20460 LOC_Os01g59860 |
| Downstream Genes | LOC_Os12g06910 LOC_Os10g34750 LOC_Os07g23520 LOC_Os08g16790 LOC_Os07g23169 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6248 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g03130.1 |
| Rice Genome Annotation | LOC_Os07g03130.1 |
| Ricechip | LOC_Os07g03130.1 |
| KEGG | osa:4342296 dosa:Os07t0123300-01 |
| Entrez-Gene | 4342296 |