RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g04040.1 View Network Show in Genome Browser |
| Other Names | Os07g0132500 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 1712201-1714497 Nucleotide Length: 2013 |
| Protein-coding | LOC_Os07g04040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g15594 LOC_Os06g44210 LOC_Os02g05630 LOC_Os06g33549 LOC_Os06g48300 LOC_Os02g55560 LOC_Os04g37904 LOC_Os04g31270 LOC_Os03g07300 LOC_Os04g52000 LOC_Os03g18150 More.. |
| Downstream Genes | LOC_Os07g32380 LOC_Os09g30100 LOC_Os09g32810 LOC_Os10g39540 LOC_Os09g38550 LOC_Os11g13820 LOC_Os08g27824 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2118c osa-miR2118q |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g04040.1 |
| Rice Genome Annotation | LOC_Os07g04040.1 |
| Ricechip | LOC_Os07g04040.1 |
| KEGG | osa:4342338 dosa:Os07t0132500-01 |
| Entrez-Gene | 4342338 |