RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g04240.1 View Network Show in Genome Browser |
| Other Names | Os07g0134800 |
| Description | succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 1860602-1866556 Nucleotide Length: 1893 |
| Protein-coding | LOC_Os07g04240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g32020 LOC_Os04g32330 LOC_Os02g31040 LOC_Os02g40830 LOC_Os01g22520 LOC_Os05g06750 LOC_Os05g23620 LOC_Os01g70960 LOC_Os02g32120 LOC_Os03g21950 LOC_Os02g13840 More.. |
| Downstream Genes | LOC_Os08g02640 LOC_Os09g20440 LOC_Os07g49520 LOC_Os07g38970 LOC_Os11g47330 LOC_Os07g05570 LOC_Os11g33240 LOC_Os11g47120 LOC_Os07g30960 LOC_Os11g36440 LOC_Os07g12890 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00020 rn01100 rn01110 |
| Metacyc Pathways | P23-PWY P105-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g04240.1 |
| Rice Genome Annotation | LOC_Os07g04240.1 |
| Ricechip | LOC_Os07g04240.1 |
| KEGG | osa:4342350 dosa:Os07t0134800-01 |
| Entrez-Gene | 4342350 |