RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g04840.1 View Network Show in Genome Browser |
| Other Names | Os07g0141400 |
| Description | PsbP, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 2137119-2138229 Nucleotide Length: 765 |
| Protein-coding | LOC_Os07g04840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g03720 LOC_Os06g21210 LOC_Os01g31690 LOC_Os01g43070 LOC_Os03g56670 LOC_Os03g03860 LOC_Os05g48630 LOC_Os04g38600 LOC_Os05g01950 LOC_Os03g22370 LOC_Os02g37060 More.. |
| Downstream Genes | LOC_Os07g36080 LOC_Os07g25430 LOC_Os08g01380 LOC_Os08g02630 LOC_Os11g47970 LOC_Os07g17390 LOC_Os07g37030 LOC_Os11g07020 LOC_Os07g47640 LOC_Os07g37240 LOC_Os12g07210 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g04840.1 |
| Rice Genome Annotation | LOC_Os07g04840.1 |
| Ricechip | LOC_Os07g04840.1 |
| KEGG | osa:4342370 dosa:Os07t0141400-01 |
| Entrez-Gene | 4342370 |