RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os07g05720.1 View Network Show in Genome Browser
Other Names	Os07g0152000
Description	TCP family transcription factor, putative, expressed
Gene Attributes	Chromosome: Chr7 CDS Coordinates (5'-3'): 2751213-2756700 Nucleotide Length: 1338
Protein-coding	LOC_Os07g05720

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0008150	biological_process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005575	cellular_component	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g14400 LOC_Os06g12220 LOC_Os02g13560 LOC_Os01g53240 LOC_Os06g42850 LOC_Os03g14420 LOC_Os06g39640 LOC_Os04g15690 LOC_Os05g35410 LOC_Os06g03540 LOC_Os04g53190 More..
Downstream Genes	LOC_Os12g07480 LOC_Os08g43160 LOC_Os10g08474 LOC_Os10g08319 LOC_Os12g15470 LOC_Os10g08540 LOC_Os09g37020 LOC_Os09g25900 LOC_Os07g41600 LOC_Os12g02120 LOC_Os10g35180 More..

miRNA Regulations
miRNAs	osa-miR319a-3p.2-3p osa-miR319b osa-miR159e osa-miR159c osa-miR159d

Database Links
Gramene	LOC_Os07g05720.1
Rice Genome Annotation	LOC_Os07g05720.1
Ricechip	LOC_Os07g05720.1
KEGG	osa:4342416 dosa:Os07t0152000-00
Entrez-Gene	4342416