RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g06440.1 View Network Show in Genome Browser |
| Other Names | Os07g0158200 |
| Description | deoxyribonuclease tatD, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 3118815-3122518 Nucleotide Length: 975 |
| Protein-coding | LOC_Os07g06440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g11120 LOC_Os04g48820 LOC_Os04g58390 LOC_Os07g06420 LOC_Os07g06410 LOC_Os03g44100 LOC_Os03g13040 LOC_Os01g60660 LOC_Os02g03050 LOC_Os03g58810 LOC_Os05g15150 More.. |
| Downstream Genes | LOC_Os12g42110 LOC_Os12g32640 LOC_Os09g19920 LOC_Os12g42100 LOC_Os07g32550 LOC_Os07g44630 LOC_Os10g10434 LOC_Os07g40930 LOC_Os07g25440 LOC_Os12g29660 LOC_Os11g06750 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5533 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g06440.1 |
| Rice Genome Annotation | LOC_Os07g06440.1 |
| Ricechip | LOC_Os07g06440.1 |
| KEGG | osa:4342437 dosa:Os07t0158200-01 |
| Entrez-Gene | 4342437 |