RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g06940.1 View Network Show in Genome Browser |
| Other Names | Os07g0163500 |
| Description | valyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 3394839-3400179 Nucleotide Length: 1212 |
| Protein-coding | LOC_Os07g06940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g41470 LOC_Os02g55140 LOC_Os03g02030 LOC_Os06g20320 |
| Downstream Genes | LOC_Os12g42870 LOC_Os12g24650 LOC_Os10g35940 LOC_Os12g34860 LOC_Os09g38060 LOC_Os11g37130 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 rn00450 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g06940.1 |
| Rice Genome Annotation | LOC_Os07g06940.1 |
| Ricechip | LOC_Os07g06940.1 |
| KEGG | osa:4342467 dosa:Os07t0163500-01 |
| Entrez-Gene | 4342467 |