RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g07060.1 View Network Show in Genome Browser |
| Other Names | Os07g0165000 |
| Description | prolyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 3483093-3486794 Nucleotide Length: 1101 |
| Protein-coding | LOC_Os07g07060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g05840 LOC_Os02g51830 LOC_Os03g10190 LOC_Os02g24612 LOC_Os03g38230 LOC_Os01g55360 LOC_Os01g63830 LOC_Os04g41300 LOC_Os04g58900 LOC_Os04g33300 LOC_Os06g07120 More.. |
| Downstream Genes | LOC_Os08g19850 LOC_Os08g42560 LOC_Os07g38300 LOC_Os12g35630 LOC_Os10g17990 LOC_Os08g25290 LOC_Os07g41680 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g07060.1 |
| Rice Genome Annotation | LOC_Os07g07060.1 |
| Ricechip | LOC_Os07g07060.1 |
| KEGG | osa:4342480 dosa:Os07t0165000-01 |
| Entrez-Gene | 4342480 |