RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os07g07690.1 View Network Show in Genome Browser
Other Names	Os07g0173400,Os07g0173300
Description	PHD-finger domain containing protein, expressed
Gene Attributes	Chromosome: Chr7 CDS Coordinates (5'-3'): 3859755-3868364 Nucleotide Length: 4329
Protein-coding	LOC_Os07g07690

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os04g14510 LOC_Os03g53700 LOC_Os03g50780 LOC_Os02g52960 LOC_Os01g65600 LOC_Os01g66420 LOC_Os02g05450 LOC_Os02g03030 LOC_Os01g73460 LOC_Os05g01230 LOC_Os06g08790 More..
Downstream Genes	LOC_Os12g34330 LOC_Os12g24540 LOC_Os07g41740 LOC_Os07g12910 LOC_Os11g18770 LOC_Os09g21770 LOC_Os08g08220

miRNA Regulations
miRNAs	osa-miR414 osa-miR1860-3p

Database Links
Gramene	LOC_Os07g07690.1
Rice Genome Annotation	LOC_Os07g07690.1
Ricechip	LOC_Os07g07690.1
KEGG	osa:4342524 osa:4342523 dosa:Os07t0173400-01 dosa:Os07t0173300-01
Entrez-Gene	4342524