RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g07709.1 View Network Show in Genome Browser |
| Other Names | Os07g0173501 |
| Description | ribosomal protein S13p/S18e, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 3872134-3875077 Nucleotide Length: 459 |
| Protein-coding | LOC_Os07g07709 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g28750 LOC_Os01g19840 LOC_Os05g38520 LOC_Os01g62350 LOC_Os02g27760 LOC_Os02g06700 LOC_Os03g40180 LOC_Os02g33140 LOC_Os05g19370 LOC_Os02g56960 LOC_Os03g04590 More.. |
| Downstream Genes | LOC_Os07g10720 LOC_Os10g32920 LOC_Os11g38959 LOC_Os07g10660 LOC_Os08g10608 LOC_Os10g27190 LOC_Os11g29190 LOC_Os09g08430 LOC_Os08g02410 LOC_Os12g05430 LOC_Os11g41610 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g07709.1 |
| Rice Genome Annotation | LOC_Os07g07709.1 |
| Ricechip | LOC_Os07g07709.1 |
| KEGG | dosa:Os07t0173501-00 |