RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g08030.1 View Network Show in Genome Browser |
| Other Names | Os07g0176900 |
| Description | ribose-5-phosphate isomerase A, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 4068002-4070237 Nucleotide Length: 843 |
| Protein-coding | LOC_Os07g08030 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g49210 LOC_Os06g12990 LOC_Os02g37870 LOC_Os02g26850 LOC_Os02g02360 LOC_Os04g43140 LOC_Os02g50350 LOC_Os03g06190 LOC_Os04g54820 LOC_Os03g58810 LOC_Os03g25450 More.. |
| Downstream Genes | LOC_Os12g03822 LOC_Os11g03990 LOC_Os10g10434 LOC_Os07g25440 LOC_Os07g47420 LOC_Os08g05880 LOC_Os11g16480 LOC_Os12g07300 LOC_Os07g33340 LOC_Os12g09280 LOC_Os09g18320 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00030 rn00710 rn01100 rn01110 rn01120 |
| Metacyc Pathways | P124-PWY NONOXIPENT-PWY CALVIN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g08030.1 |
| Rice Genome Annotation | LOC_Os07g08030.1 |
| Ricechip | LOC_Os07g08030.1 |
| KEGG | osa:4342543 dosa:Os07t0176900-01 |
| Entrez-Gene | 4342543 |