RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g09310.1 View Network Show in Genome Browser |
| Other Names | Os07g0190800 |
| Description | thioredoxin, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 4880568-4882733 Nucleotide Length: 417 |
| Protein-coding | LOC_Os07g09310 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g51700 LOC_Os01g58680 LOC_Os07g08840 LOC_Os03g58630 LOC_Os06g07210 LOC_Os02g44500 LOC_Os04g56070 LOC_Os02g56100 LOC_Os02g53790 LOC_Os05g30800 LOC_Os01g16190 More.. |
| Downstream Genes | LOC_Os11g18170 LOC_Os12g33100 LOC_Os07g43170 LOC_Os08g44770 LOC_Os10g38660 LOC_Os11g09280 LOC_Os10g38670 LOC_Os10g38489 LOC_Os10g38160 LOC_Os10g38470 LOC_Os10g38360 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1862f osa-miR1862g osa-miR1862a osa-miR1862b osa-miR1862c |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g09310.1 |
| Rice Genome Annotation | LOC_Os07g09310.1 |
| Ricechip | LOC_Os07g09310.1 |
| KEGG | osa:4342618 dosa:Os07t0190800-01 |
| Entrez-Gene | 4342618 |