RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g10130.1 View Network Show in Genome Browser |
| Other Names | Os07g0200700 |
| Description | squalene synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 5440352-5445910 Nucleotide Length: 1233 |
| Protein-coding | LOC_Os07g10130 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g12910 LOC_Os07g08170 LOC_Os01g62040 LOC_Os03g12900 LOC_Os04g11880 LOC_Os01g68950 LOC_Os01g68940 LOC_Os02g04710 LOC_Os02g04690 LOC_Os06g51250 LOC_Os01g25189 More.. |
| Downstream Genes | LOC_Os07g10600 LOC_Os08g01840 LOC_Os07g10490 LOC_Os11g18194 LOC_Os11g35710 LOC_Os09g39220 LOC_Os11g08569 LOC_Os11g18366 LOC_Os12g05810 LOC_Os09g33986 LOC_Os08g09690 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00906 rn00909 rn01100 rn01110 |
| Metacyc Pathways | PWY-2541 PWY66-3 PWY66-341 PWY66-4 |
| Reference | |
|---|---|
| PubMed | 21926092 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g10130.1 |
| Rice Genome Annotation | LOC_Os07g10130.1 |
| Ricechip | LOC_Os07g10130.1 |
| KEGG | osa:4342663 dosa:Os07t0200700-01 |
| Entrez-Gene | 4342663 |