RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g10490.1 View Network Show in Genome Browser |
| Other Names | Os07g0204900 |
| Description | zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 5645594-5651228 Nucleotide Length: 1737 |
| Protein-coding | LOC_Os07g10490 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g51290 LOC_Os04g41260 LOC_Os04g47270 LOC_Os04g57560 LOC_Os01g51320 LOC_Os04g53190 LOC_Os02g51880 LOC_Os01g18320 LOC_Os02g17700 LOC_Os01g45760 LOC_Os07g02130 More.. |
| Downstream Genes | LOC_Os09g38320 LOC_Os12g43130 LOC_Os10g38850 LOC_Os09g20284 LOC_Os12g16650 LOC_Os08g04780 LOC_Os07g43370 LOC_Os09g20260 LOC_Os10g40570 LOC_Os11g18366 LOC_Os11g35710 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00906 rn01100 rn01110 |
| Metacyc Pathways | CAROTENOID-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g10490.1 |
| Rice Genome Annotation | LOC_Os07g10490.1 |
| Ricechip | LOC_Os07g10490.1 |
| KEGG | osa:4342680 dosa:Os07t0204900-01 |
| Entrez-Gene | 4342680 |