RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g10720.1 View Network Show in Genome Browser |
| Other Names | Os07g0208000 |
| Description | 40S ribosomal protein S15a, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 5819718-5821777 Nucleotide Length: 393 |
| Protein-coding | LOC_Os07g10720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g40180 LOC_Os05g19370 LOC_Os02g14059 LOC_Os05g11710 LOC_Os01g10820 LOC_Os06g35730 LOC_Os04g52361 LOC_Os05g48310 LOC_Os04g42380 LOC_Os05g48220 LOC_Os03g22180 More.. |
| Downstream Genes | LOC_Os09g31180 LOC_Os08g02400 LOC_Os08g02410 LOC_Os08g10608 LOC_Os12g38000 LOC_Os07g47780 LOC_Os10g32920 LOC_Os11g29190 LOC_Os09g08430 LOC_Os07g42950 LOC_Os07g42450 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g10720.1 |
| Rice Genome Annotation | LOC_Os07g10720.1 |
| Ricechip | LOC_Os07g10720.1 |
| KEGG | osa:4342697 dosa:Os07t0208000-01 |
| Entrez-Gene | 4342697 |