RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g11110.1 View Network Show in Genome Browser |
| Other Names | Os07g0212200 |
| Description | NAD dependent epimerase/dehydratase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 6134015-6136780 Nucleotide Length: 1179 |
| Protein-coding | LOC_Os07g11110 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g51470 LOC_Os06g09610 LOC_Os01g64270 LOC_Os03g16050 LOC_Os06g04150 LOC_Os03g10060 LOC_Os07g08200 LOC_Os07g08030 LOC_Os03g36750 LOC_Os02g35090 LOC_Os02g58790 More.. |
| Downstream Genes | LOC_Os12g23180 LOC_Os09g10760 LOC_Os08g29370 LOC_Os07g37030 LOC_Os10g37180 LOC_Os07g37250 LOC_Os08g44320 LOC_Os12g42090 LOC_Os08g44810 LOC_Os09g28620 LOC_Os11g37890 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00052 rn00520 rn01100 rn01110 |
| Metacyc Pathways | UDPNACETYLGALSYN-PWY PWY-3821 P61-PWY GALACTMETAB-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g11110.1 |
| Rice Genome Annotation | LOC_Os07g11110.1 |
| Ricechip | LOC_Os07g11110.1 |
| KEGG | osa:4342714 dosa:Os07t0212200-01 |
| Entrez-Gene | 4342714 |