RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g13530.1 View Network Show in Genome Browser |
| Other Names | Os07g0239400 |
| Description | ras-related protein, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 7742963-7746781 Nucleotide Length: 648 |
| Protein-coding | LOC_Os07g13530 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g06760 LOC_Os01g37800 LOC_Os01g12730 LOC_Os03g09140 LOC_Os05g44050 LOC_Os06g35814 LOC_Os05g34540 LOC_Os03g46390 LOC_Os05g23860 LOC_Os02g51430 LOC_Os01g08450 More.. |
| Downstream Genes | LOC_Os08g18110 LOC_Os07g31370 LOC_Os10g27990 LOC_Os07g41180 LOC_Os08g42000 LOC_Os07g16970 LOC_Os12g43550 LOC_Os07g33850 LOC_Os09g34040 LOC_Os10g31864 LOC_Os09g15790 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2104 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00710 rn01100 rn01120 |
| Metacyc Pathways | CALVIN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g13530.1 |
| Rice Genome Annotation | LOC_Os07g13530.1 |
| Ricechip | LOC_Os07g13530.1 |
| KEGG | osa:4342802 dosa:Os07t0239400-01 |
| Entrez-Gene | 4342802 |