RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g15370.1 View Network Show in Genome Browser |
| Other Names | Os07g0257200 |
| Description | metal transporter Nramp6, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 8871436-8877405 Nucleotide Length: 1617 |
| Protein-coding | LOC_Os07g15370 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0019725 | cellular homeostasis | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g37080 LOC_Os05g38150 LOC_Os03g52840 LOC_Os05g39240 LOC_Os01g62900 LOC_Os02g40870 LOC_Os06g37150 LOC_Os01g61550 LOC_Os01g61510 LOC_Os03g59620 LOC_Os01g55650 More.. |
| Downstream Genes | LOC_Os09g20090 LOC_Os08g23440 LOC_Os11g03430 LOC_Os12g03130 LOC_Os09g32952 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR156c-3p osa-miR156g-3p |
| Reference | |
|---|---|
| PubMed | 22368778 23132948 22751306 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g15370.1 |
| Rice Genome Annotation | LOC_Os07g15370.1 |
| Ricechip | LOC_Os07g15370.1 |
| KEGG | osa:4342859 dosa:Os07t0257200-01 |
| Entrez-Gene | 4342859 |