RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g15440.1 View Network Show in Genome Browser |
| Other Names | Os07g0258100 |
| Description | alanyl-tRNA synthetase family protein, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 8930409-8943858 Nucleotide Length: 3945 |
| Protein-coding | LOC_Os07g15440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g67510 LOC_Os03g43850 LOC_Os01g71690 LOC_Os04g57230 LOC_Os05g03050 LOC_Os04g42920 LOC_Os01g55900 LOC_Os01g46610 LOC_Os01g14580 LOC_Os05g41880 LOC_Os05g49760 More.. |
| Downstream Genes | LOC_Os11g19720 LOC_Os12g31370 LOC_Os11g04954 LOC_Os12g04980 LOC_Os11g40150 LOC_Os07g30240 LOC_Os10g40650 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g15440.1 |
| Rice Genome Annotation | LOC_Os07g15440.1 |
| Ricechip | LOC_Os07g15440.1 |
| KEGG | osa:4342861 dosa:Os07t0258100-01 |
| Entrez-Gene | 4342861 |