RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g15460.1 View Network Show in Genome Browser |
| Other Names | Os07g0258400 |
| Description | metal transporter Nramp6, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 8966023-8970882 Nucleotide Length: 1557 |
| Protein-coding | LOC_Os07g15460 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0019725 | cellular homeostasis | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g65110 LOC_Os03g26210 LOC_Os01g46720 LOC_Os03g19420 LOC_Os03g51530 LOC_Os03g54000 LOC_Os03g32499 LOC_Os03g31730 LOC_Os05g47780 LOC_Os06g37080 LOC_Os05g38150 More.. |
| Downstream Genes | LOC_Os12g18410 LOC_Os12g13350 LOC_Os12g13340 LOC_Os11g15624 LOC_Os09g04384 LOC_Os09g20090 LOC_Os08g23440 LOC_Os11g03430 LOC_Os12g03130 LOC_Os09g32952 |
| Reference | |
|---|---|
| PubMed | 22067109 21697258 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g15460.1 |
| Rice Genome Annotation | LOC_Os07g15460.1 |
| Ricechip | LOC_Os07g15460.1 |
| KEGG | osa:4342862 dosa:Os07t0258400-01 |
| Entrez-Gene | 4342862 |