RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g17770.1 View Network Show in Genome Browser |
| Other Names | Os07g0278400 |
| Description | tryptophanyl-tRNA synthetase, cytoplasmic, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 10499765-10502932 Nucleotide Length: 975 |
| Protein-coding | LOC_Os07g17770 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g14750 LOC_Os04g41490 LOC_Os03g21550 LOC_Os03g45410 LOC_Os03g05980 LOC_Os03g18410 LOC_Os07g02210 LOC_Os06g16290 LOC_Os03g38260 LOC_Os03g21940 LOC_Os05g46270 More.. |
| Downstream Genes | LOC_Os08g09260 LOC_Os08g05490 LOC_Os08g23110 LOC_Os08g44450 LOC_Os11g29190 LOC_Os07g47860 LOC_Os11g08940 LOC_Os08g42910 LOC_Os12g39070 LOC_Os07g48300 LOC_Os09g32532 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g17770.1 |
| Rice Genome Annotation | LOC_Os07g17770.1 |
| Ricechip | LOC_Os07g17770.1 |
| KEGG | dosa:Os07t0278400-00 |