RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g19560.1 View Network Show in Genome Browser |
| Other Names | Os07g0296200 |
| Description | TATA-binding protein-associated factor 2N, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 11592279-11596865 Nucleotide Length: 1185 |
| Protein-coding | LOC_Os07g19560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g48960 LOC_Os05g33240 LOC_Os06g44030 LOC_Os05g28010 LOC_Os01g48810 LOC_Os01g59140 LOC_Os01g23630 LOC_Os02g07070 LOC_Os02g04490 LOC_Os02g12850 LOC_Os06g43790 More.. |
| Downstream Genes | LOC_Os08g37960 LOC_Os10g02630 LOC_Os08g01070 LOC_Os09g02284 LOC_Os07g43050 LOC_Os07g40730 LOC_Os12g39400 LOC_Os11g40100 LOC_Os11g37080 LOC_Os09g31482 LOC_Os10g31730 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g19560.1 |
| Rice Genome Annotation | LOC_Os07g19560.1 |
| Ricechip | LOC_Os07g19560.1 |
| KEGG | osa:4342966 dosa:Os07t0296200-01 |
| Entrez-Gene | 4342966 |