RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g22600.1 View Network Show in Genome Browser |
| Other Names | Os07g0408700 |
| Description | spermidine synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 12716456-12722911 Nucleotide Length: 972 |
| Protein-coding | LOC_Os07g22600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g42090 LOC_Os02g39790 LOC_Os04g30780 LOC_Os03g13800 LOC_Os01g52390 LOC_Os06g33710 LOC_Os02g15550 LOC_Os04g04980 LOC_Os06g19680 LOC_Os06g37440 LOC_Os03g63490 More.. |
| Downstream Genes | LOC_Os08g40890 LOC_Os09g37120 LOC_Os10g38850 LOC_Os09g25620 LOC_Os10g17280 LOC_Os11g01420 LOC_Os12g01430 LOC_Os09g19560 LOC_Os11g06750 LOC_Os07g46760 LOC_Os07g23169 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn00330 rn00480 rn01100 rn00410 |
| Metacyc Pathways | BSUBPOLYAMSYN-PWY ARGSPECAT-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g22600.1 |
| Rice Genome Annotation | LOC_Os07g22600.1 |
| Ricechip | LOC_Os07g22600.1 |
| KEGG | osa:4342996 dosa:Os07t0408700-02 |
| Entrez-Gene | 4342996 |