RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g25430.1 View Network Show in Genome Browser |
| Other Names | Os07g0435300 |
| Description | photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 14533304-14534386 Nucleotide Length: 450 |
| Protein-coding | LOC_Os07g25430 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g33830 LOC_Os05g48630 LOC_Os03g56670 LOC_Os07g04840 LOC_Os03g22370 LOC_Os06g21210 LOC_Os06g15400 LOC_Os01g31690 LOC_Os03g03860 LOC_Os03g09220 LOC_Os07g05480 More.. |
| Downstream Genes | LOC_Os09g30340 LOC_Os08g02630 LOC_Os07g37240 LOC_Os11g47970 LOC_Os07g36080 LOC_Os08g01380 LOC_Os08g33820 LOC_Os12g19470 LOC_Os12g19381 LOC_Os07g37550 LOC_Os12g07210 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g25430.1 |
| Rice Genome Annotation | LOC_Os07g25430.1 |
| Ricechip | LOC_Os07g25430.1 |
| KEGG | osa:4343070 dosa:Os07t0435300-01 |
| Entrez-Gene | 4343070 |