RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g27780.1 View Network Show in Genome Browser |
| Other Names | Os07g0461900 |
| Description | aminotransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 16209147-16210655 Nucleotide Length: 735 |
| Protein-coding | LOC_Os07g27780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47590 LOC_Os02g44000 LOC_Os04g46460 LOC_Os03g42110 LOC_Os03g44150 LOC_Os03g17120 LOC_Os07g01820 LOC_Os03g31690 LOC_Os04g01590 LOC_Os01g49290 LOC_Os03g54160 More.. |
| Downstream Genes | LOC_Os10g35170 LOC_Os12g13320 LOC_Os11g19770 LOC_Os07g39690 LOC_Os12g37560 LOC_Os07g41370 LOC_Os08g41950 LOC_Os09g32948 LOC_Os07g49330 LOC_Os08g09270 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00330 rn01100 rn01110 rn01210 |
| Metacyc Pathways | ARGSYNBSUB-PWY GLUTORN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g27780.1 |
| Rice Genome Annotation | LOC_Os07g27780.1 |
| Ricechip | LOC_Os07g27780.1 |
| KEGG | osa:4343164 dosa:Os07t0461900-01 |
| Entrez-Gene | 4343164 |