RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g29360.1 View Network Show in Genome Browser |
| Other Names | Os07g0476200 |
| Description | tetratricopeptide repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 17230234-17245358 Nucleotide Length: 3210 |
| Protein-coding | LOC_Os07g29360 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g01880 LOC_Os04g25550 LOC_Os05g08970 LOC_Os01g08970 LOC_Os07g02350 LOC_Os02g47880 LOC_Os03g10940 LOC_Os03g13370 LOC_Os03g54930 LOC_Os02g53230 LOC_Os03g55490 More.. |
| Downstream Genes | LOC_Os12g35030 LOC_Os12g38970 LOC_Os08g06070 LOC_Os10g41520 LOC_Os08g31240 LOC_Os07g31280 LOC_Os10g36250 LOC_Os12g26030 LOC_Os09g26180 LOC_Os12g41190 LOC_Os10g34540 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR160f-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g29360.1 |
| Rice Genome Annotation | LOC_Os07g29360.1 |
| Ricechip | LOC_Os07g29360.1 |
| KEGG | osa:4343217 dosa:Os07t0476200-02 |
| Entrez-Gene | 4343217 |