RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g29440.1 View Network Show in Genome Browser |
| Other Names | Os07g0477250 |
| Description | S-adenosylmethionine synthetase 2, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 17276190-17276684 Nucleotide Length: 495 |
| Protein-coding | LOC_Os07g29440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g60090 LOC_Os03g51984 LOC_Os06g04270 LOC_Os04g19740 |
| Downstream Genes | LOC_Os11g26850 LOC_Os10g40650 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 rn01110 |
| Metacyc Pathways | PWY-5041 ETHYL-PWY SAM-PWY PWY-4361 METHIONINE-DEG1-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g29440.1 |
| Rice Genome Annotation | LOC_Os07g29440.1 |
| Ricechip | LOC_Os07g29440.1 |
| KEGG | dosa:Os07t0477250-00 |