RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g30150.1 View Network Show in Genome Browser |
| Other Names | Os07g0484800 |
| Description | phosphoribosyl transferase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 17787745-17801445 Nucleotide Length: 564 |
| Protein-coding | LOC_Os07g30150 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g30830 LOC_Os01g55820 LOC_Os01g65260 LOC_Os05g35580 LOC_Os01g56620 LOC_Os05g08950 LOC_Os01g72240 LOC_Os05g43690 LOC_Os02g50350 LOC_Os01g49290 LOC_Os02g03540 More.. |
| Downstream Genes | LOC_Os08g23730 LOC_Os07g40940 LOC_Os11g34350 LOC_Os07g30250 LOC_Os08g02410 LOC_Os08g02400 LOC_Os09g08430 LOC_Os12g38000 LOC_Os11g16370 LOC_Os08g13690 LOC_Os09g24690 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2926 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 |
| Metacyc Pathways | P1-PWY SALVADEHYPOX-PWY PWY-5043 P121-PWY PWY-6605 PWY-6610 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g30150.1 |
| Rice Genome Annotation | LOC_Os07g30150.1 |
| Ricechip | LOC_Os07g30150.1 |
| KEGG | osa:4343246 dosa:Os07t0484800-01 |
| Entrez-Gene | 4343246 |