RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g30160.1 View Network Show in Genome Browser |
| Other Names | Os07g0485000 |
| Description | trehalose phosphatase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 17816192-17821232 Nucleotide Length: 1080 |
| Protein-coding | LOC_Os07g30160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g44210 LOC_Os01g53000 LOC_Os02g54820 LOC_Os05g44100 LOC_Os01g54560 LOC_Os03g12360 |
| Downstream Genes | LOC_Os09g23350 LOC_Os09g20990 LOC_Os08g34580 LOC_Os09g25890 LOC_Os08g31980 LOC_Os10g25560 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR399i osa-miR399j |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 |
| Metacyc Pathways | TRESYN-PWY PWYG-321 PWY-881 TREHALOSESYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g30160.1 |
| Rice Genome Annotation | LOC_Os07g30160.1 |
| Ricechip | LOC_Os07g30160.1 |
| KEGG | osa:4343248 dosa:Os07t0485000-01 |
| Entrez-Gene | 4343248 |