RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g30170.1 View Network Show in Genome Browser |
| Other Names | Os07g0485100 |
| Description | nitrilase, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 17820555-17823755 Nucleotide Length: 1242 |
| Protein-coding | LOC_Os07g30170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g39210 LOC_Os01g59340 LOC_Os07g07260 LOC_Os06g48060 LOC_Os01g51320 LOC_Os02g35470 LOC_Os02g46962 LOC_Os06g45430 LOC_Os02g07750 LOC_Os01g53650 LOC_Os01g51010 More.. |
| Downstream Genes | LOC_Os08g03350 LOC_Os08g04130 LOC_Os08g12750 LOC_Os07g49270 LOC_Os07g38270 LOC_Os12g01370 LOC_Os09g16920 LOC_Os11g01340 LOC_Os12g32240 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn00410 rn00770 rn01100 rn00983 |
| Metacyc Pathways | PWY-3982 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g30170.1 |
| Rice Genome Annotation | LOC_Os07g30170.1 |
| Ricechip | LOC_Os07g30170.1 |
| KEGG | osa:4343249 dosa:Os07t0485100-01 |
| Entrez-Gene | 4343249 |