RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g30200.2 View Network Show in Genome Browser |
| Other Names | Os07g0485400 |
| Description | tRNA synthetases class II domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 17838525-17844995 Nucleotide Length: 1365 |
| Protein-coding | LOC_Os07g30200 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g29860 LOC_Os01g06020 LOC_Os02g53680 LOC_Os02g58220 LOC_Os03g25130 LOC_Os02g42230 LOC_Os05g05840 LOC_Os07g07820 LOC_Os06g47830 LOC_Os05g02040 LOC_Os02g14110 More.. |
| Downstream Genes | LOC_Os07g37720 LOC_Os07g38950 LOC_Os07g37710 LOC_Os11g34210 LOC_Os09g38772 LOC_Os10g26720 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g30200.2 |
| Rice Genome Annotation | LOC_Os07g30200.2 |
| Ricechip | LOC_Os07g30200.2 |
| KEGG | osa:4343250 dosa:Os07t0485400-01 |
| Entrez-Gene | 4343250 |