RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os07g30250.1 View Network Show in Genome Browser |
| Other Names | Os07g0486100 |
| Description | RFT1, putative, expressed |
| Gene Attributes | Chromosome: Chr7 CDS Coordinates (5'-3'): 17881007-17887821 Nucleotide Length: 891 |
| Protein-coding | LOC_Os07g30250 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g49870 LOC_Os07g30150 LOC_Os03g44530 LOC_Os05g01810 LOC_Os04g42520 LOC_Os02g40010 LOC_Os01g45750 LOC_Os03g14260 LOC_Os01g73310 LOC_Os05g01600 LOC_Os03g61970 More.. |
| Downstream Genes | LOC_Os07g43980 LOC_Os12g42370 LOC_Os12g39340 LOC_Os12g39860 LOC_Os12g40130 LOC_Os11g06390 LOC_Os10g36650 LOC_Os09g36440 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR818a osa-miR818b osa-miR818c osa-miR818d osa-miR818e osa-miR1436 |
| Database Links | |
|---|---|
| Gramene | LOC_Os07g30250.1 |
| Rice Genome Annotation | LOC_Os07g30250.1 |
| Ricechip | LOC_Os07g30250.1 |
| KEGG | osa:4343254 dosa:Os07t0486100-01 |
| Entrez-Gene | 4343254 |